Hi Anastasia: Yes the '/' is really there before the autofs. It is puzzling.
thanks, Alan On Thu, Aug 15, 2013 at 3:15 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > I didn't suggest taking it off, I meant make sure that the '/' is there, > because the error message suggested to me that a '/' was missing from a > filename listed IN that text file. Check your original error message. > > > On Thu, 15 Aug 2013, Alan Francis wrote: > > Hi Anastasia: >> >> I took off the '/' before the autofs, but then it gave me a different >> problem. >> >> csh::alanf@cerebro[/autofs/**space/dali_003/users/BW_** >> project_DTI/FreeSurfer_5.3_**Data/diffusion_ >> recons] : tractstats2table --load-pathstats-from-** >> fileautofs/space/dali_003/**users/BW_project_DTI/** >> FreeSurfer_5.3_Data/diffusion_**re >> cons/Forceps_Major_CC.list.txt --overall --tablefileautofs/space/dali_** >> 003/users/BW_project_DTI/**FreeSurfer_5.3_Data/diffusion_**re >> cons/Forceps_Major_CC.All.**table >> >> ERROR: the fileautofs/space/dali_003/**users/BW_project_DTI/** >> FreeSurfer_5.3_Data/diffusion_**re >> cons/Forceps_Major_CC.list.txt doesnt exist >> >> Actually it does exist. >> >> thanks, >> >> Alan >> >> >> On Thu, Aug 15, 2013 at 2:40 PM, Anastasia Yendiki >> <ayend...@nmr.mgh.harvard.edu> wrote: >> >> Is it really autofs without the '/' in front? >> >> On Thu, 15 Aug 2013, Alan Francis wrote: >> >> Hi Anastasia: >> >> Sorry to bother you again. I am trying to extract trac >> stats from the FS >> data. When I run the following script, it gives me an >> error message: >> >> csh::alanf@cerebro[/autofs/**space/dali_003/users/BW_** >> project_DTI/FreeSurfer_5 >> .3_Data/diffusion_ >> recons] : tractstats2table--load-**pathstats-from-file/autofs/** >> space/dali_003/users/BW_**project_DTI/FreeS >> urfer_5.3_Data/diffusion_r >> econs/Forceps_Major_CC.list.**txt --overall--tablefile/autofs/** >> space/dali_003/users/BW_**project_DTI/FreeSurfer_5.3_**Data/ >> diffusion_r >> econs/Forceps_Major_CC.All.**table >> >> Parsing the .stats files >> >> ERROR: The statsfileautofs/space/dali_**003/users/BW_project_DTI/** >> FreeSurfer_5.3_Data/diffusio >> n_re >> cons/BW_101/dpath/fmajor_PP_**avg33_mni_bbr/pathstats.**overall.txt >> is not found >> or is too small to be a valid statsfile >> >> However, when I manually checked the pathstats.overall.txt, the >> data is >> physically there. Am I doing something wrong? >> >> thanks so much, >> >> Alan >> >> >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >>
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