Hi Anastasia/ FreeSurfers

I did not use the conventional path usr/local/freesurfer. since there is
very little disc space in this location. Alternately I set the environment
at a location where is plenty of disc space and then sourced it.

For the SUBJECTS_DIR I set the environment *without using the dollar sign $*
.

The Freesurfer recons and Tracula ran without problem and saved the
processed data to this location.  So the FReeSurfer recons and tracula data
are in the same location.

Now I am trying to use the dollar sign, so that I can extract the trac
data, but I keep getting the error message.

csh::alanf@cerebro [/autofs/space/dali_003/users/
BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : setenv SUBJECTS_DIR
$FreeSurfer_Data/diffusion_recons

FreeSurfer_Data: Undefined variable.


thanks,

Alan


On Wed, Aug 14, 2013 at 1:08 PM, Anastasia Yendiki <
ayend...@nmr.mgh.harvard.edu> wrote:

>
> Where did you get this command line? You should set the SUBJECTS_DIR to
> the location on disk where your freesurfer recons are.
>
>
>
> On Wed, 14 Aug 2013, Alan Francis wrote:
>
>  Hi Anastasia:
>>
>> I fixed that problem - thank you. However, I have another question. i am
>> trying extract trac data but when I set
>> environment, I get an error message:
>>
>> csh::alanf@cerebro [/autofs/space/dali_003/users/**
>> BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons] : setenv
>> SUBJECTS_DIR $FreeSurfer_Data/diffusion_**recons
>>
>> FreeSurfer_Data: Undefined variable.
>>
>> How do I solve this?
>>
>> Thanks again,
>>
>> Alan
>>
>>
>>
>> On Wed, Aug 14, 2013 at 11:06 AM, Anastasia Yendiki <
>> ayend...@nmr.mgh.harvard.edu> wrote:
>>
>>       Hi Alan - I'm not sure where the output from the one subject ends
>> the the other starts. For future
>>       reference, it's best to attach the entire trac-all.log files
>> instead of copying and pasting parts of them
>>       into your message.
>>
>>       I see two error messages here:
>>       1.      "ERROR: must specify as many DWI dicoms as subjects"
>>       This is as it says. Check your configuration file and see if the
>> numbers of entries in subjlist and
>>       dcmlist are the same.
>>
>>       2.      "ERROR: reading
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_frame.nii.gz"
>>       I'm guessing the problem is in the b-value table. How many entries
>> are there that correspond to low-b
>>       images?
>>
>>       a.y
>>
>>       On Tue, 13 Aug 2013, Alan Francis wrote:
>>
>>       Hi Anastasia:
>>
>>       Thanks to your advice most of the data have been processed using
>> Tracula. Two brains gave me error
>>       messages that are
>>       as follows:
>>
>>
>>       csh::alanf@cerebro
>>       
>> [/autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons]
>> : trac-all -prep
>>       -c /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons/dmrirc-**124
>>       ERROR: must specify as many DWI dicoms as subjects
>>       csh::alanf@cerebro
>>       
>> [/autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons]
>> : trac-all -prep
>>       -c /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons/dmrirc-**118
>>       INFO: SUBJECTS_DIR is
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons
>>       INFO: Diffusion root is
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons/
>>       Actual FREESURFER_HOME /autofs/cluster/freesurfer/**
>> centos6_x86_64/stable5_3_0
>>       trac-preproc -c
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**scripts/dmrirc.local
>>       -log
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**scripts/trac-all.log
>>       -cmd
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**scripts/trac-all.cmd
>>       #-----------------------------**--------
>>       /usr/local/freesurfer/stable5_**3_0//bin/trac-preproc
>>       #-----------------------------**--------
>>       #@# Image corrections Mon Aug 12 17:11:05 EDT 2013
>> mri_convert/autofs/space/dali_**003/users/BW_project_DTI/**
>> FreeSurfer_5.3_Data/diffusion_**recons//118/Diffusion_Recons/**200
>>       90224_14110
>>       2DIFFUSIONHighRess016a001.nii
>>       /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.nii.gz
>> mri_convert/autofs/space/dali_**003/users/BW_project_DTI/**
>> FreeSurfer_5.3_Data/diffusion_**recons//118/Diffusion_Recons/**200
>>       90224_14110
>> 2DIFFUSIONHighRess016a001.nii
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.nii.gz
>> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
>> readingfrom/autofs/space/dali_**003/users/BW_project_DTI/**
>> FreeSurfer_5.3_Data/diffusion_**recons//118/Diffusion_Recons/**20090224_1
>> 4110
>> 2DIFFUSIONHighRess016a001.nii.**..
>> TR=7640.00, TE=0.00, TI=0.00, flip angle=0.00
>> i_ras = (-0.997762, -0.0667414, -0.00403802)
>> j_ras = (-0.0662713, 0.979101, 0.192276)
>> k_ras = (0.00887916, -0.192114, 0.981333)
>> writing to
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.nii.gz...
>> cp
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons/118/**Diffusion_Recons/118.bvecs
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.mghdti.bvecs
>> cp
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons/118/**Diffusion_Recons/118.bvals
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.mghdti.bvals
>> flip4fsl
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.nii.gz
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig_flip.nii.gz
>> INFO: input image orientation is LAS
>> INFO: input image determinant is -6.8719
>> fslswapdim
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.nii.gz
>> x y z
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig_flip.nii.gz
>> fslorient -forceradiological
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig_flip.nii.gz
>> INFO: found
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.mghdti.bvals,
>> converting to FSL format
>> INFO: found
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig.mghdti.bvecs,
>> converting to FSL format
>> mv-f/autofs/space/dali_003/**users/BW_project_DTI/**
>> FreeSurfer_5.3_Data/diffusion_**recons//118/dmri/dwi_orig_**
>> flip.mghdti.bve
>> cs
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/bvecs
>> mv-f/autofs/space/dali_003/**users/BW_project_DTI/**
>> FreeSurfer_5.3_Data/diffusion_**recons//118/dmri/dwi_orig_**
>> flip.mghdti.bva
>> ls
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/bvals
>> eddy_correct
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_orig_flip.nii.gz
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi.nii.gz 0
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0000
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0001
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0002
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0003
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0004
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0005
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0006
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0007
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0008
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0009
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0010
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0011
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0012
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0013
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0014
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0015
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0016
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0017
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0018
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0019
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0020
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0021
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0022
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0023
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0024
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0025
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0026
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0027
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0028
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0029
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0030
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0031
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0032
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0033
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0034
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0035
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0036
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0037
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0038
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0039
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0040
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0041
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0042
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0043
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0044
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0045
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0046
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0047
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0048
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0049
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0050
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0051
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0052
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0053
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0054
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0055
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0056
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0057
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0058
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0059
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0060
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0061
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0062
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0063
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0064
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0065
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0066
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0067
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0068
>> processing
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_tmp0069
>> mv -f /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/bvecs
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/bvecs.norot
>> xfmrot
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi.ecclog
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/bvecs.norot
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/bvecs
>> ln -sf
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi.nii.gz
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/data.nii.gz
>> awk: cmd. line:1: fatal: cannot open file `0' for reading (No such file
>> or directory)
>> mri_concat --i
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_frame.nii.gz
>> --mean --o
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/lowb.nii.gz
>> niiRead(): error opening file
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_frame.nii.gz
>> ninputs = 1
>> Checking inputs
>> ERROR: reading
>> /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_**
>> Data/diffusion_recons//118/**dmri/dwi_frame.nii.gz
>> Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC
>> 2013 x86_64 x86_64 x86_64 GNU/Linux
>>
>> trac-preproc exited with ERRORS at Mon Aug 12 17:30:05 EDT 2013
>>
>> As always - thanks for your help,
>>
>> best,
>>
>> Alan
>>
>> Martinos Center.
>>
>>
>>
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>.
>>  If the e-mail was sent to you in error
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>> dispose of the e-mail.
>>
>>
>>
>>
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