Actually, never mind, I found a way through bet!

Panos

________________________________________
From: Fotiadis, Panagiotis
Sent: Wednesday, July 24, 2013 10:08 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Binary mask of the skull

Hi,

I was wondering whether there was a command (or a flag in a command such as 
mri_binarize) that can give me the binary mask of my subject's skull. I was 
thinking of creating a binary ask of the subject's brain and then one of the 
brain and the skull and subtracting them, but I was wondering whether there is 
a faster way.

Thanks,
Panos

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