I support what Marcos found. Freesurfer does not work on CentOS in VirtualBox because of the 3D error in the VirtualBox driver for graphics under CentOS. I solved the problem by using Vmware player instead. It seems more mature in the 3D driver. If others would like to use freesurfer on a virtualmachine i would recommend CentOS on Vmware player. I had the problem with Freesurfer 5,3, VirtualBox 4.2.16 with the adons 4.2.16_86992. When using ubuntu i have had some errors in FSL. So i would stick to CentOS on Vmware if you need to run on a windows 8 64bit machine
Best regards On Tue, Jul 16, 2013 at 3:44 PM, Marcos Martins da Silva < marc...@hucff.ufrj.br> wrote: > ** > > Hi, Rune and Zeke > I have posted some time ago my experience with VirtualBox. I also got > similar segfaults. The only way I could run FreeSurfer without problems was > installing CentOS64 on a second hard disk so I have a dual boot system and > skipped VirtualBox. Freesurfer 5.3 also solved some problems with recent > Linux distributions related to the newest glibc. So if you have a linux > system you can try to run FreeSurfer over it (Fedora works for sure and it > seems several in this list uses Ubuntu). In my opinion the problem is > related to VirtualBox itself, not the host neither the guest system. > Cheers, > Marcos > Em Qui, 2013-07-11 às 10:57 +0200, Rune Frandsen escreveu: > > "mri_convert" just starts the man page for mri_convert. > > I have been looking at other things and 3D view in FSL also crashes with a > 2657 segmentation fault and a core dump. I think the problem is in the > virtualized 3D driver or something like that. > It seems that CentOS 6.4 does have some problems with 3D. > I use the latest vboxadditions 4.2.16. > I dont think the error is Freesurfer. But ill dig deeper. > Thank you for your time. > > > Best regards > Rune > > > On Wed, Jul 10, 2013 at 4:29 PM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote: > > Rune, > > I have not seen this error before. Can you please type mri_convert on the > command line and tell me what, if any, output is produced. > > -Zeke > > > > > On 07/10/2013 05:14 AM, Rune Frandsen wrote: > I have just installed Freesurfer and wanted to try tkmedit > I get a Segfault error and it asked me to write to this mail. > > The .xdebug_tkmedit is > > tkmedit started: Wed Jul 10 10:53:23 2013 > > /usr/local/freesurfer/tktools/tkmedit.bin > > $Id: tkmedit.c,v 1.343 2011/03/01 01:41:22 nicks Exp $ $Name: stable5 $ > > Segfault > Creating main window > xDebug stack (length: 2) > 01: main() > 01: Creating main window > 00: > 00: > > My system is a fresh install of CentOS 6.4 64bit installed in VirtualBox. > The only other program installed is FSL. The base machine is a HP Envy dv6 > i7 16GB with Win8 64bit. > > Is this a known problem? > > > Best regards > Rune Frandsen (MD, phd student) > Danish Center for Sleep Medicine > runefrand...@gmail.com > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/ <http://www.partners.org/complianceline> > complianceline <http://www.partners.org/complianceline> . If the e-mail > was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > > > -- > Rune Frandsen > runefrand...@gmail.com > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Rune Frandsen runefrand...@gmail.com
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
