hi sebastian, please take a look at pysurfer (https://github.com/nipy/pysurfer) and nibabel (https://github.com/nipy/nibabel).
the relevant code is here: https://github.com/nipy/nibabel/blob/master/nibabel/freesurfer/io.py cheers, satra On Mon, Jul 15, 2013 at 9:11 AM, Sebastian Urchs <sebastian.ur...@gmail.com>wrote: > Hi, > > I am trying to figure out how to load thickness data into python such that > I would be able to identify the thickness at a given mesh node and also > identify surrounding nodes. I searched the mailinglist and found this > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07307.html but > this unfortunately did not solve my question as I was unable to find a > downloadable version of pymgh. > > Is there some python package that you could point me to and that allows me > to load thickness data and do analysis in python? > > Thanks in advance! > Sebastian > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
