Thank you fore responding. I ran recon-all and it worked fine. however when i run bbregister i get an error "ERROR: cannot find /usr/lib/fsl/etc/flirtsch/xyztrans.sch". I have installed fsl 5.0 and FSLDIR set right i am running this in ubuntu 12.04 using freesurfer 5.3. am I doing some thing wrong thank you Aaron Tanenbaum
On Wed, Jul 10, 2013 at 11:34 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > wrote: > > You will need to register your volume with the anatomical with > bbregister. bbregister will take a "template" which should be the time > point you used for motion correction. Then run mri_vol2surf to create a > new data set sampled on the surface > doug > > > > On 07/10/2013 12:32 PM, Aaron Tanenbaum wrote: > > Hola Freesurfers, > > I am new to Freesurfer and still learning the basics. I have been > > given a project and have not found a way to do it. Part of this task > > involves taking a 4dfp volume time series and convert it to a time > > series of a surface. This 4dfp I have is a statistical analysis mapped > > on to a specific atlas volume. Does anyone know of a way to do this. > > Any help will be highly appreciated. > > Gracias > > Aaron Tanenbaum > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
