Hi Jason

what does the aseg look like? Is that labeled as ventricle (incorrectly)?
Bruce
On Wed, 10 Jul 2013, Jason Tourville wrote:

Hello freesurfers,

In the attached pic, the red cross hairs fall in the calcarine fissure (right 
hemisphere). In this scan (and some others I've
reviewed recently), this cortex falls within the wm surface and is therefore 
excluded from the cortical surface. This is despite
that area not being labeled as white matter in the wm.mgz volume. It's also 
despite my efforts to creatively erase wm volume
voxels to encourage the wm surface to exclude these cortical voxels. Is there a 
fix for this type of error? 

The data were generated with FS v5.3. No control points were set.
Thanks for any help,
Jason

--
Jason A. Tourville, Ph.D.
Research Assistant Professor
Department of Speech, Language,
and Hearing Sciences
Boston University
677 Beacon St.
Boston, MA 02215
Phone: (617)353-9484
Fax: (617)353-7755



--
Jason A. Tourville, Ph.D.
Research Assistant Professor
Department of Speech, Language,
and Hearing Sciences
Boston University
677 Beacon St.
Boston, MA 02215
Phone: (617)353-9484
Fax: (617)353-7755

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