Hi Gari, use --targ for a target volume (not a subject) to use as the
template for the output. The target subject is actually stored in the
register.dat file, so you can just spec --fstarg (no arguments)
doug
On 7/1/13 2:45 PM, Garikoitz Lerma-Usabiaga wrote:
Hi,
I want to obtain volume statistics from a ROI in fsaverage.
I have register.dat and a .nii file (the ROI), but I don't now how to
get to the .label.
The last try has been:
mri_vol2vol --mov $SUBJECTS_DIR/fsaverage/label/ROI.nii
--o $SUBJECTS_DIR/fsaverage/label/ROI.mgh
--reg
$SUBJECTS_DIR/fsaverage/mri/transforms/my_own_register_created_with_bbregister.dat
--targ fsaverage
(but it is failing, error:
corRead(): can't open file $SUBJECTS_DIR/fsaverage/COR-.info)
My next steps were:
cor2label (in fsaverage)
mri_label2label (per every subject)
mri_segstats (per every subject)
Is there any simpler method to accomplish the same? Or at least that
it works?
many thanks,
Gari
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