Dear Bruce, Thank you very much for your suggestion, but I am afraid that I still don't quite understand you.
In order to make it simple, suppose I have two files, Barba001.IMA and Barba002.IMA, coming directly from the scanner. Now if I enter *recon-all -s Barba -i Barba001.IMA* from the command line, I am only able to find *001.mgz* in the Barba/mri/orig. Aren't I supposed to to find 001.mgz and 002.mgz? Thank you so much! Sincerely, Ye On Mon, Jun 24, 2013 at 5:41 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Ye > > you only need to give it a single file from each run and it will find the > rest. The only time you use -i more than once is if you acquired more than > 1 T1-weighted volume. Definitely don't give it all the files that make up > the same volume > > cheers > Bruce > > On Mon, 24 Jun 2013, ye tian wrote: > > Dear David, >> I wonder whether there is a short cut for recon-all -s Barbara -i >> /path_to_data/scan1.dicom -i /path_to_data/scan2.dicom ... -i >> /path_to_data/scan100.dicom >> >> Recon-all -i takes only a single file as an input. A typical user, >> however, >> has hundreds of files for a particular subject. For example, the directory >> Barbara may have 100 scans. Therefore, the above command is necessary to >> include all the scans. >> >> I understand that I can write loops to a text file and then copy and paste >> to command line. However, I wonder whether there is a simpler way to input >> several files or even a directory to recon-all. >> >> Thank you very much! >> >> Sincerely, >> Ye >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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