Hello Siddharth, The error message says "Include the flag -cw256 with recon-all!" So I would recommend giving that a try.
-Zeke On 06/18/2013 12:33 PM, Ray, Siddharth wrote: > Hi all, > > I am coming across this error for couple of my subjects: > > WARNING > ==================++++++++++++++++++++++++======================================= > > The physical sizes are (240.00 mm, 240.00 mm, 347.20 mm), which cannot > fit in 256^3 mm^3 volume. > > The resulting volume will have 348 slices. > > If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu). > > ==================================================++++++++++++++++++++++++=============== > > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > > reading from /home/sray2/Data/50183/50183/mri/rawavg.mgz... > > TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 > > i_ras = (-1, 0, 0) > > j_ras = (0, 1, 0) > > k_ras = (0, 0, 1) > > Original Data has (0.468746, 0.468746, 1.4) mm size and (512, 512, 248) > voxels. > > Data is conformed to 1 mm size and 348 voxels for all directions > > changing data type from short to uchar (noscale = 0)... > > MRIchangeType: Building histogram > > Reslicing using trilinear interpolation > > writing to /home/sray2/Data/50183/50183/mri/orig.mgz... > > **************************************** > > ERROR! FOV=348.000 > 256 > > Include the flag -cw256 with recon-all! > > Inspect orig.mgz to ensure the head is fully visible. > > **************************************** > > Linux localhost.localdomain 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 > 01:33:01 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s 50183 exited with ERRORS at Sat Jun 15 06:02:30 CDT 2013 > > Do anyone know whats wrong and how can I fix this? > > Thanks in advance. > > -Siddharth > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
