Hi David,
recon-all -base <ID> -autorecon-pial
should be enough to pick up both edits (probably you already looked at
the tutorial at
http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial
that describes most edits). Don't forget to re-run all longitudinals
from scratch after you do this.
Best, Martin
On 06/06/2013 02:09 PM, David Tate wrote:
We have recently run a set of longitudinal data (FreeSurfer5.3) and
are making edits to the base pial surfaces. It is clear that there
are two different ways of doing pial edits including: 1. editing the
brainmask.mgz and 2. the brain.finalsurfs.mgz. I recognize that they
are specific ways to deal with different issues in the surface
reconstruction.
My question is will the following command (recon-all -base <ID>
-autorecon2-pial -autorecon3) pick up both edits in the -base rerun
or
will you need to make the brainmask.mgz edits, rerun the -base recon
command the make brain.finalsufs.mgz edits, rerun the -base command?
Thanks,
David
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Martin Reuter, Ph.D.
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology - Harvard Medical School
MGH / HMS / MIT
A.A.Martinos Center for Biomedical Imaging
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Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
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reu...@mit.edu
Web : http://reuter.mit.edu
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