Hi Bruce Dev version as in post 5.3? I'd prefer to avoid tksurfer as I'd like to do this programmatically for a large number of subjects and labels.
mw On Sun, Jun 9, 2013 at 5:44 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Michael > > you can do this in the tksurfer gui (label->open/close/dilate/**erode) or > in a tcl script (labl_open, ....) > > I think I also put it in the newest version of mri_label2label but it's > probably only in dev (which we could give you if you want). > > cheers > Bruce > > > > On Sun, 9 Jun 2013, Michael Waskom wrote: > > Thanks Jürgen. From the help it looks like this operates in the volume, >> and >> -l just constrains the operations to a label. Does it work on surface >> meshes >> too? >> >> >> On Sat, Jun 8, 2013 at 11:58 PM, Jürgen Hänggi >> <j.haen...@psychologie.uzh.ch> wrote: >> Hi Michael >> >> Try mri_morphology with the –l option. It can do closing. >> >> Cheers >> Jürgen >> >> >> On [DATE], "Michael Waskom" <[ADDRESS]> wrote: >> >> Hi, >> >> Are there any utilities for performing basic morphological >> operations on surface-based label files buried somewhere >> within Freesurfer? Specifically I am hoping to perform a >> closing. >> >> Thanks! >> mw >> >> ______________________________**______________________________** >> ____________ >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person >> to whom it is >> addressed. If you believe this e-mail was sent to you in error >> and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent >> to you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> ------------------------------**------------------------------** >> --------------- >> - >> Jürgen Hänggi, Ph.D. >> Division Neuropsychology >> Institute of Psychology >> University of Zurich >> Binzmuehlestrasse 14, PO Box 25 >> 8050 Zurich, Switzerland >> 0041 44 635 73 97 (phone office) >> 0041 76 445 86 84 (phone mobile) >> 0041 44 635 74 09 (fax office) >> BIN 4.D.04 (office room number) >> j.haenggi[at]psychologie.uzh.**ch <http://psychologie.uzh.ch> (email) >> http://www.psychologie.uzh.ch/**neuropsy/<http://www.psychologie.uzh.ch/neuropsy/>(website) >> http://www.juergenhaenggi.ch (private website) >> >> This e-mail (and any attachment/s) contains confidential and/or >> privileged >> information. If you are not the intended recipient (or have received >> this >> e-mail in error) please notify the sender immediately and destroy this >> e-mail. Any unauthorised copying, disclosure or distribution of the >> material in this e-mail is strictly forbidden. >> ------------------------------**------------------------------** >> --------------- >> - >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >>
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