Stefano, step 4 should be: "chmod +x $FREESURFER_HOME/bin/mris_resample"
When you do an "ls -l" in the $FREESURFER_HOME/bin directory, you need to see the to see the x's next to mris_resample just like you do with all the other files in that directory. -Zeke On 06/07/2013 11:49 AM, std...@virgilio.it wrote: > Hi list, > > during trac-all -prep I have this error: > > MRISregister() return, current seed 0 > writing registered surface to > /Applications/freesurfer/subjects/subject_prova/Diff03/surf/rh.cvs.tocvs_avg35.sphere.reg... > expanding nbhd size to 1 > mris_resample: Command not found. > Darwin iMac > > I have performed my analysis by the following steps (as recommended by > Zeke and Lilla): > > 1. download "unKnow" file (7.6 MB) at > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/mris_resample > 2. put file in $FREESURFER/bin/ > 4. chmod +x ~/mris_resample as recommended by Daniel (in the first test > I did not use this command) > 5. start trac-all -prep > 6. ERROR (in inter-reg step) > > What's happen? > > Thank you very much, > > > Stefano > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
