HI,
A patch is now available for the "mris_resample : Command not found" error you encountered. Simply download the file from the following link and place it in your $FREESURFER_HOME/bin directory: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/mris_resample --Lilla On Thu, 6 Jun 2013, std...@virgilio.it wrote:
Hi Anastasia, I have resolved the previous problem by writing configuration file with sudo nano in command line. Now I'm running trac-all -prep but I have this error: writing registered surface to /Applications/freesurfer/subjects/subject_prova/Diff03/surf/rh.cvs.tocvs_avg35.sphere.reg... expanding nbhd size to 1 mris_resample: Command not found. What's happened? Thanks, Stefano ----Messaggio originale---- Da: std...@virgilio.it Data: 6-giu-2013 0.51 A: <ayend...@nmr.mgh.harvard.edu> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: [Freesurfer] R: Re: R: Re: Tracula I obtain /Applications/freesurfer/subjects/subject_prova my DWI file is in Diff01, Diff02 ... that are in subject_prova folder. Thanks, Stefano ----Messaggio originale---- Da: ayend...@nmr.mgh.harvard.edu Data: 6-giu-2013 0.42 A: <std...@virgilio.it> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: Re: Tracula What do you get when you run "echo $SUBJECTS_DIR"? On Thu, 6 Jun 2013, std...@virgilio.it wrote: > Hi Anastasia, > > yes, I have check the SUBJECTS_DIR. I do not understand why all previous > configuration file start normally and this no. > Do you note some line that might be wrong additionally to setenv > SUBJECTS_DIR line. > > > Stefano > > > > ----Messaggio originale---- > Da: ayend...@nmr.mgh.harvard.edu > Data: 5-giu-2013 16.09 > A: <std...@virgilio.it> > Cc: <freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: Tracula > > > Is the "setenv SUBJECTS_DIR" line really commented out? You must set > SUBJECTS_DIR, see the example configuration file on the wiki and under > $FREESURFER_HOME/bin/dmrirc.example. > > On Wed, 5 Jun 2013, std...@virgilio.it wrote: > > > Hi list and Anastasia, > > I'm performing a set of data with tracula version 3.0. I have change my > > dmrirc file respect to previous analyses and now I have one problem > > > > "set: Variable name must begin with a letter. > > ERROR: must specify as many DWI dicoms as subjects". > > > > I do not find the line that is wrong. I think to have approximately used > the > > same lines of previous and correct analysis. > > > > I have attached the configuration file. Note that I'm using nii.gz. > > > > Thanks and best regards. > > > > > > Stefano > > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
