Here is the log file. http://gate.nmr.mgh.harvard.edu/filedrop2/?p=zrh2oi9>
Thank you! On Thu, Jun 6, 2013 at 2:43 PM, Erin Browning <brown...@uwm.edu> wrote: > Yes, it was. I tried copy and pasting it and just attaching the log file. > Can I paste urls here? I'll just upload it to pastebin or something like > that. > > > On Thu, Jun 6, 2013 at 2:38 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > > wrote: > >> That's weird, people upload their recon-all.log files all the time. Was >> the email kicked back to you? >> >> On 06/06/2013 03:27 PM, Erin Browning wrote: >> > The log file for recon-all is too large. How should I send it? >> > >> > >> > On Thu, Jun 6, 2013 at 1:48 PM, Douglas N Greve >> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> > >> > Hi Erin, thanks for reposting. Can you post the recon-all.log file? >> > doug >> > >> > >> > On 06/06/2013 02:37 PM, Erin Browning wrote: >> > > Hi everyone-- >> > > >> > > I emailed the other day about hyperintensity after running >> > motioncor. >> > > We've skipped motioncor in our processing now, but we keep getting >> > > this error while running AR2. >> > > >> > > \n mri_ca_register -invert-and-save transforms/talairach.m3z \n >> > > mri passed volume size is different from the one used to create >> > M3D data >> > > Loading, Inverting, Saving, Exiting ... >> > > Reading transforms/talairach.m3z >> > > gunzip -c transforms/talairach.m3z >> > > Inverting GCAM >> > > ERROR: mri_ca_register with non-zero status 0 >> > > Darwin cerebrum.uwm.edu <http://cerebrum.uwm.edu> >> > <http://cerebrum.uwm.edu> 10.8.0 Darwin Kernel >> > > Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; >> > > root:xnu-1504.15.3~1/RELEASE_I386 i386 >> > > recon-all -s freesurfer exited with ERRORS at Wed Jun 5 >> > 19:32:56 CDT 2013 >> > > >> > > I tried rerunning recon-all -s freesurfer -talairach before >> running >> > > AR2, and that didn't fix the error. What's going wrong? >> > > >> > > Thanks, >> > > Erin Browning >> > > >> > > >> > > >> > > _______________________________________________ >> > > Freesurfer mailing list >> > > Freesurfer@nmr.mgh.harvard.edu >> > <mailto:Freesurfer@nmr.mgh.harvard.edu> >> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > -- >> > Douglas N. Greve, Ph.D. >> > MGH-NMR Center >> > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> > Phone Number: 617-724-2358 >> > Fax: 617-726-7422 >> > >> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> > Outgoing: >> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu <mailto: >> Freesurfer@nmr.mgh.harvard.edu> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> > The information in this e-mail is intended only for the person to >> > whom it is >> > addressed. If you believe this e-mail was sent to you in error and >> > the e-mail >> > contains patient information, please contact the Partners >> > Compliance HelpLine at >> > http://www.partners.org/complianceline . If the e-mail was sent to >> > you in error >> > but does not contain patient information, please contact the >> > sender and properly >> > dispose of the e-mail. >> > >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
