Hi Gabriel
seems like something is wrong with that surface file. Can you load the
lh.sphere.reg in tksurfer and see if it looks ok?
Bruce
On Thu, 6 Jun 2013,
Gabriel Gonzalez Escamilla wrote:
Dear Freesurfers
I am running an autorecon3 to the same subject that Rafa sent you (the name
looks different but is exactly the same subject), with the command to fix
the ribbon.mgz the autorecon-2 has finished, so I continued with
-autorecon3, but now is encountering the following error, this time seems to
be something with the seg.mgz.
#-----------------------------------------
#@# Cortical Parc lh Thu Jun 6 17:01:26 CEST 2013
/root/trabajo/freesurfer/subjects/qsm1_17/scripts
mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234
qsm1_17 lh
../surf/lh.sphere.reg/root/trabajo/freesurfer/average/lh.curvature.buckner40.filled.desikan_kill
iany.2010-03-25.gcs ../label/lh.aparc.annot
setting seed for random number generator to 1234
using ../mri/aseg.mgz aseg volume to correct midline
$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
$Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $
f[113526]->v[1] = 539832625 - out of range!
reading atlas
from/root/trabajo/freesurfer/average/lh.curvature.buckner40.filled.desikan_kill
iany.2010-03-25.gcs...
reading color table from GCSA file....
average std = 1.0 using min determinant for regularization = 0.011
0 singular and 384 ill-conditioned covariance matrices regularized
Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT
2006 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s qsm1_17 exited with ERRORS at Thu Jun 6 17:01:33 CEST 2013
For more details, see the log file
/root/trabajo/freesurfer/subjects/qsm1_17/scripts/recon-all.log
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Any ideas how to fix this?
Bests,
Gabriel
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