Thanks. So the very first step I'll run recon-all -all, then I'll do all my corrections and rerun just recon-all -autorecon2-cp -autorecon3 ... Is that right? Cheers Claudia
2013/6/5 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Hi Claudia > > recon-all -autorecon2-cp -autorecon3 ... > > will run everything the autorecon2-wm and autorecon2-pial would and more, > so you can just run that. > > cheers > Bruce > > > On Wed, 5 Jun 2013, Claudia Dacquino wrote: > > Hi everyone,I'm sorry, this is a probably very basic question, but I'm a >> >> little bit confused about the recon-all correct flowchart. >> >> I mean, the first step is >> recon-all -s <subjid> -all (comprising autorecon1, autorecon2 and >> autorecon3), correct? >> >> After this step if I want to add control points then I have to re-run: >> recon-all -s <subject> -autorecon2-cp -autorecon3 >> >> The same if I want to edit pial surface: >> >> recon -all -s <subject> -autorecon2-pial -autorecon3 >> >> Or to edit white matter: >> >> recon-all -s <subject> -autorecon2-wm -autorecon3. >> >> Is that correct? >> >> Is there a system to reduce processing time once I've run eh first step >> (rec >> on-all -s -all)? >> >> I mean if I want to add control points, then to edit pial surface and >> white matter, have I to do the three processes separately, or there is a >> way to do >> the three things at once and then running just one autorecon? >> >> If that is permissible, which is the correct command line at the end of >> the porcess? >> >> I'm sorry for the confusion. >> >> Thanks in advance to everyone. >> >> Claudia >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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