is your disk partition full? And please cc the list so others can answer
Bruce
On
Thu, 30 May 2013, Claudia Dacquino wrote:
Yes I did run mri_info, these are the results:
Volume information for brainmask.gcuts.mgz
type: MGH
dimensions: 256 x 256 x 256
voxel sizes: 1.0000, 1.0000, 1.0000
type: INT (1)
fov: 256.000
dof: 0
xstart: -128.0, xend: 128.0
ystart: -128.0, yend: 128.0
zstart: -128.0, zend: 128.0
TR: 7.92 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00
degrees
nframes: 1
PhEncDir: UNKNOWN
ras xform present
xform info: x_r = -1.0000, y_r = 0.0000, z_r = -0.0000, c_r =
8.4909
: x_a = -0.0000, y_a = 0.0000, z_a = 1.0000, c_a =
-0.4031
: x_s = 0.0000, y_s = -1.0000, z_s = -0.0000, c_s =
-34.1638
talairach xfm :
Orientation : LIA
Primary Slice Direction: coronal
voxel to ras transform:
-1.0000 0.0000 -0.0000 136.4909
-0.0000 0.0000 1.0000 -128.4031
0.0000 -1.0000 -0.0000 93.8362
0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform:
-1.0000 -0.0000 -0.0000 136.4909
-0.0000 -0.0000 -1.0000 93.8362
-0.0000 1.0000 -0.0000 128.4031
0.0000 0.0000 0.0000 1.0000
Cheers
2013/5/30 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
did you run out of disk space? Can you run mri_info on it?
On Thu, 30 May 2013, Claudia Dacquino wrote:
Hi Freesurfers,I'm trying to remove some dura which
affect my surfaces with
the command
recon-all -skullstrip -clean-bm -gcut -subjid
but then I can't use tkmedit to check that.
The message I get is:
Error: Loading volume brainmask.gcut.mgz Couldn't
read the anatomical
volume. Tkmedit couldn't read the volume you
specified. This could be
because the image format wasn't recognized, or it
couldn't find the proper
header, or the file(s) were unreadable, or it was
the wrong size.
Actually I did check in brainmask.gcut.mgz directory
properties, and I saw
the size of image is something like 150 KB, instead
of 1 MB like is
brainmask.mgz.
What is the problem?
Thanks,
Claudia
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