Dear Freesurfer experts I am trying to process the data of a Longitudinal DTI Study with 2 Timepoints
I have encountered the following error while running the tracula pre-processing: ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/ FSFAST_HOME /Applications/freesurfer//fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Users/zenso/Subjects/structural_23VPs FSL_DIR /Applications/fsl MNI_DIR /Applications/freesurfer//mni FSL_DIR /Applications/fsl [iMac:Subjects] zenso% trac-all -prep -c /Users/zenso/Subjects/Tracula/dmrirc.long.sad Too many )'s. INFO: SUBJECTS_DIR is /Users/zenso/Subjects/structural_23VPs INFO: Diffusion root is /Users/zenso/Subjects/Tracula Actual FREESURFER_HOME /Applications/freesurfer trac-preproc -c /Users/zenso/Subjects/Tracula/1Pre_VP3/scripts/dmrirc.local -log /Users/zenso/Subjects/Tracula/1Pre_VP3/scripts/trac-all.log -cmd /Users/zenso/Subjects/Tracula/2Post_VP3/scripts/trac-all.log -cmd /Users/zenso/Subjects/Tracula/2Post_VP3/scripts/trac-all.cmd ; trac-preproc -c /Users/zenso/Subjects/Tracula/VP3_Base/scripts/dmrirc.local -log /Users/zenso/Subjects/Tracula/VP3_Base/scripts/trac-all.log -cmd /Users/zenso/UZH/MSc/FS2013/Psychologie/Masterarbeit/Subjects/Tracula/VP3_Base/scripts/trac-all.cmd ; ERROR: flag ; unrecognized -c /Users/zenso/Subjects/Tracula/1Pre_VP3/scripts/dmrirc.local -log /Users/zenso/Subjects/Tracula/1Pre_VP3/scripts/trac-all.log -cmd /Users/zenso/Subjects/Tracula/1Pre_VP3/scripts/trac-all.cmd ; trac-preproc -c /Users/zenso/Subjects/Tracula/2Post_VP3/scripts/dmrirc.local -log /Users/zenso/Subjects/Tracula/2Post_VP3/scripts/trac-all.log -cmd /Users/zenso/Subjects/Tracula/2Post_VP3/scripts/trac-all.cmd ; trac-preproc -c /Users/zenso/Subjects/Tracula/VP3_Base/scripts/dmrirc.local -log /Users/zenso/Subjects/Tracula/VP3_Base/scripts/trac-all.log -cmd /Users/zenso/Subjects/Tracula/VP3_Base/scripts/trac-all.cmd ; Darwin iMac.local 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64 trac-preproc exited with ERRORS at Sa 25 Mai 2013 11:28:57 CEST IsRunningFile: Undefined variable. ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Please let me know if this is not enough information. Thanks a lot for your support. Vivian _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
