Hi Amber, See the following wikipage which I created to troubleshoot various GUI issues. Specifically the second issue down which addresses the "Bus Error".
https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_GUIs_troubleshooting -Zeke On 05/24/2013 03:26 PM, Amber M Gregory wrote: > I am having a problem using tkmedit and tksurfer with Freesurfer. > Freeview is working. Below is the tkmedit error and relevant specs. Any > suggestions are welcome. > * > General Specs* > Apple OS 10.6.8 > Processor: 2x 2.26 Ghz Quad-core Intel Xeon > 16 GB DDR3 > Freesurfer Ver 5.3.0 > Chipset Model: NVIDIA GeForce GT 120 > > *Graphic card Specs* > Chipset Model: NVIDIA GeForce GT 120 > Type: GPU > Bus: PCIe > Slot: Slot-1 > PCIe Lane Width: x16 > VRAM (Total): 512 MB > Vendor: NVIDIA (0x10de) > Device ID: 0x0640 > Revision ID: 0x00a1 > ROM Revision: 3386 > Displays: > VG930m-3: > Resolution: 1280 x 1024 @ 60 Hz > Pixel Depth: 32-Bit Color (ARGB8888) > Display Serial Number: QC2094821097 > Main Display: Yes > Mirror: Off > Online: Yes > Rotation: Supported > Display Connector: > Status: No Display Connected > > * > Code* > [Victor-Marks-Mac-Pro:subjects/bert/mri] victormark% tkmedit bert/ > brainmask.mgz -aux T1.mgz -surfs -aseg > Couldn't create output file .xdebug_tkmedit^CKilled > [Victor-Marks-Mac-Pro:subjects/bert/mri] victormark% cd .. > [Victor-Marks-Mac-Pro:freesurfer/subjects/bert] victormark% cd .. > [Victor-Marks-Mac-Pro:/Applications/freesurfer/subjects] victormark% > tkmedit bert/ brainmask.mgz -aux T1.mgz -surfs -aseg > Converting main surface: 100% done. > Converting main surface: 100% done. > Converting pial surface: 100% done. > Converting main surface: 100% done. > Converting main surface: 100% done. > Converting pial surface: 100% done. > LoadSegmentationVolume main aseg.mgz > /Applications/freesurfer//FreeSurferColorLUT.txt > Bus error > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
