Hi Clelia,
What do you run to source FS and do you get any output in your terminal
after doing so? What operating system are you running? You might try
using c-shell instead of bash.
-Louis
On Fri, 24 May 2013, clelia pellicano wrote:
Hi Louis,
thank you for your answer.
I sourced freesurfer again, but I still get 'command not found'.
What can I try?
Thank you,
Clelia
On Thu, May 23, 2013 at 7:15 PM, Louis Nicholas Vinke
<vi...@nmr.mgh.harvard.edu> wrote:
Hi Clelia,
If this is in a new terminal then you'll have to source freesurfer again.
See here for details:
https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration
-Louis
On Wed, 22 May 2013, clelia pellicano wrote:
Hi,
I have run recon-all -s bert -all to try my installation and it
worked.
Now, when I try to use other command (and also again recon-all -s
bert -all) I always get this:
dyn1097-8:subjects cpellica$ tkmedit bert orig.mgz
-bash: tkmedit: command not found
dyn1097-8:subjects cpellica$ tkmedit -s bert orig.mgz
-bash: tkmedit: command not found
dyn1097-8:subjects cpellica$ tksurfer -s bert rh pial
-bash: tksurfer: command not found
dyn1097-8:subjects cpellica$ qdec
-bash: qdec: command not found
dyn1097-8:subjects cpellica$ recon-all help
-bash: recon-all: command not found
dyn1097-8:subjects cpellica$ recon-all -s bert -all
-bash: recon-all: command not found
I don't know how to do. Please, could you help me?
Thanks
Clelia
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