Jamie, Does running with the -all flag run all the way to complete without error? We recommend running with -all and then inspect for defects afterwards instead of running the first run in stages.
Nick > Hi Freesurfer List- > > My group just recently installed 5.3.0 and I kept running into the same > error during -autorecon2 where mri_segstats could find ribbon.mgz. > > I was slightly stumped on the issue, as the ReconAllTable says > mri_segstats > isn't run until autorecon3? I attached my bugr output and also my log file > for one subject (I have about 10+ subjects that error in the same way). > > It looks like -inflate2 finished fine (which was previously one of the > last > steps in autorecon2). Any thoughts? Any help is greatly appreciated! > > Thanks much! > > Best, > jamie. > > -- > Jamie L. Hanson > Waisman Laboratory for Brain Imaging & Behavior | Child Emotion Research > Lab > University of Wisconsin - Madison > 1500 Highland Avenue > Madison, WI 53705 > Email: jamielarshan...@gmail.com > Homepage: http://brainimaging.waisman.wisc.edu/~hanson/ > > > > --------------------------------------------------------------------- > > FREESURFER_HOME: /apps/x86_64_sci6/freesurfer-latest > > Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 > > RedHat release: Scientific Linux release 6.2 (Carbon) > > Kernel info: Linux 2.6.32-279.22.1.el6.x86_64 x86_64 > > --------------------------------------------------------------------- > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
