Hi Caspar it's hard to tell from a single slice. There does seem to be some darkening there, probably due to B0. Is there wm on the next slice inferior/superior? If you upload the whole subject dir I'll take a look.
cheers Bruce p.s. NHP data? On Thu, 16 May 2013, Caspar M. Schwiedrzik wrote: > Hi! > I am failing to get a proper pial surface in orbitofrontal cortex. > See attached screenshot. > This is NHP data, processed with version 4.5. > I am not sure how to proceed here, as there is no clear with matter. > Any advice would be appreciated. > Thanks! > Caspar > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
