Hi all, We ran tracula prep stage and it exited with errors: 'Selected streamline has fewer than 5 points'. We have attached the log and error files if needed.
Thank you in advance! Skyler -- Skyler G. Shollenbarger Graduate Student - UWM Brain Lab Clinical Psychology & Neurospychology University of Wisconsin-Milwaukee
trac-all.log.gz
Description: GNU Zip compressed data
------------------------------ SUBJECT freesurfer DATE Tue May 14 11:58:15 CDT 2013 USER brainlab HOST cerebrum.uwm.edu PROCESSOR i386 OS Darwin Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 $Id: trac-preproc,v 1.17.2.5 2011/05/20 06:51:51 ayendiki Exp $ /usr/local/freesurfer/bin/trac-preproc PWD /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data CMD /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.51851.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug
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