Hi Efrat, you've done the preproc-sess correctly, but you'll need to modify the mkanalysis-sess. See
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthrough dpug On 05/13/2013 02:26 PM, Efrat Kliper wrote: > > Dear freeSurfer expert, > > I am trying to perform whole brain functional connectivity analysis > > Is there a wiki for resting state analysis? I have only found this > wiki > pagehttps://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc > > So far I have run the following commands: > > preproc-sess -s TB_482 -fsd Rest -stc odd -surface fsaverage lhrh > -mni305 -fwhm 5 -per-run > > What is the next step? > > Should I use the mkanalysis-sess command? > > (mkanalysis-sess -TR 3 -fsd Rest -stc odd -surface fsaverage lh > -mni305 2 -fwhm 5 -analysis TB_482_lh -notask)? > > Running this command it seems to create only an output file with a > list of information and nothing more, what am i doing wrong? > > In addition for resting state analysis,band filter of 0.01-0.08Hz > needs to be done.How do i do that and to which of the output files? I > don’t find any record about that either. > > > Thanks in advance, > > Efrat > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
