Hi Bruce, Thanks for the quick response. The label is a manually traced area of the cortex. It is in subject scanner space and has a single value, so it probably would not work with bbregister. I can load it in tkmedit as a segmentation and the alignment is correct. I attached a screenshot. Is there a way to select the values greater than zero in tkmedit and save as a label that could be used in vol2surf? I have other labels that are larger so I would prefer not to retrace them if possible.
[image: Inline image 2] Best, Jonathan On Sun, May 12, 2013 at 10:11 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Jonathan > > what is the label? What space is it in? If it has gray/white contrast you > could try bbregister. > > cheers > Bruce > > On Sat, 11 May 2013, Jonathan DuBois wrote: > > Hi Freesurfer Experts, >> I have a binary volume label in subject space that I converted from MINC >> to MGZ. I would like to register it to >> the surface of that subject as a flat label. I thought I would be able to >> do so with mri_vol2surf but I am not >> sure how to generate the required registration file. Is that the correct >> command, and if so, which registration >> file should I use? >> >> Thanks >> Jonathan >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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