Joe, This error appears when a binary built on CentOS 6 is run on an OS with an older glibc, like CentOS 4/5. Fsl no longer builds on 4/5 so that is why this appeared for you recently. Update to CentOS 6 if you are at the nmr center or use the fsl by doing this
setenv FSL_DIR /usr/pubsw/packages/fsl/4.1.9 the source freesurfer setup. Nick On May 3, 2013, at 8:58 PM, "Joseph Andreano" <andre...@nmr.mgh.harvard.edu> wrote: > Hello, > > I was attempting to preprocess a scan earlier and I got an error which > seems to indicate a problem with the version of FSL: > >> From this command: > > preproc-sess -s nmasa_016_130111 -fsd bold -stc up -surface fsaverage lhrh > -mni305 -fwhm 5 -per-run > > I get this error: > > #----------Using FSL's BET to Extract Brain--------------# > /autofs/cluster/iaslab/NMASA/mri/func/encoding/nmasa_016_130111/bold > bet.fsl /tmp/mkbrainmask_32456/in.nii /tmp/mkbrainmask_32456/brain -m -f 0.1 > /usr/pubsw/packages/fsl/current/bin/bet2: /usr/lib64/libstdc++.so.6: > version 'GLIBCXX_3.4.9' not found (required by > /usr/pubsw/packages/fsl/current/bin/bet2) > > Looking through the archive, I see others have had similar problems, and > the answers generally referred to updating the version of FSL. Anybody > know what to do about this? > > Thanks, > Joe Andreano > > > _________________________________ > > Joseph M. Andreano, PhD > Postdoctoral Researcher > Interdisciplinary Affective > Science Laboratory > Massachusetts General Hospital > _________________________________ > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
