Hi Bruce, I think wm.mgz it's accurate enough, but what you mean? I'm trying to upload data, but I've problems with your server. Cheers, Claudia
2013/4/29 Claudia Dacquino <claudia.dacqu...@gmail.com> > Hi Bruce, > I think wm.mgz it's accurate enough, but what you mean? > I'm trying to upload data, but I've problems with your server. > Cheers, > Claudia > > > 2013/4/29 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > >> Hi Claudia >> >> it really depends on the individual case and what's causing the >> exclusion. Does the wm.mgz look accurate? If so, you may have a topological >> defect that is being fixed incorrectly. Usually we focus on fixing the >> white boundary and that will also correct the pial. You can set the >> expected gray matter intensities in the xopts file, but that is rarely >> necessary and only if your gray matter looks very different than the >> sequences we are used to. >> >> If you can't sort it out feel free to upload you data. >> >> cheers >> Bruce >> >> >> On Mon, 29 Apr 2013, Claudia Dacquino wrote: >> >> Hi Freesurfers,I have a question about pial editing. >>> >>> I have some reconructions in which there's a lot of grey matter excluded, >>> and consequently white metter too. I did correct these images manually by >>> control points editing, and then autorecon2-cp autorecon3, but some >>> cortical >>> grey matter continues to not be included in the pial surface, and I have >>> white matter areas that are still not included in either the pial or >>> white >>> matter boundaries. >>> Is there anyother ethods for adding grey matter in the pial surfeces >>> other >>> than editing control points (such as by editing voxels to add grey >>> matter), >>> or something like that? >>> Thanks for your help. >>> Claudia >>> >>> >>> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > >
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