Hi Surfers,
as of version 5.2, i'm getting an error using asegstats2table, depending on
how i sort the subjects:
andreas@psy058:~$ asegstats2table --subjects $(ls $SUBJECTS_DIR | sort -t _ -k
1 -nk 2) -t segstats.csv --skip -d comma
SUBJECTS_DIR : /mnt/raid/freesurfer/subjects
Parsing the .stats files
Skipping /mnt/raid/freesurfer/subjects/fsaverage/stats/aseg.stats
Skipping /mnt/raid/freesurfer/subjects/lh.EC_average/stats/aseg.stats
Skipping /mnt/raid/freesurfer/subjects/qdec/stats/aseg.stats
Skipping /mnt/raid/freesurfer/subjects/rh.EC_average/stats/aseg.stats
Traceback (most recent call last):
File "/usr/local/freesurfer/bin/asegstats2table", line 553, in <module>
if(nmeasures != nmeasures0 and not options.common_flag and not
options.all_flag):
NameError: name 'nmeasures0' is not defined
i don't get that error if i either:
1) remove the non-subjects (fsaverage, qdec, etc..) from the list, or:
2) do not sort the list like i do
the subjects list is attached, sorted the way it produces the error
greetings,
Andreas
fsaverage
lh.EC_average
qdec
rh.EC_average
H458_1Md
H458_2F
H458_2Fd
H458_3F
H458_4F
H458_4Fd
H458_5Fd
H458_5M
H458_6M
H458_6Md
H458_7F
H458_7Fd
H458_8Fd
H458_8M
H458_9F
H458_10Fd
H458_10M
H458_11Fd
H458_12F
H458_12Fd
H458_13M
H458_14Fd
P458_14M
H458_15F
H458_15Fd
H458_16M
H458_16Md
H458_17Md
H458_18M
P458_19F
H458_20F
H458_20Md
H458_21F
H458_21Md
H458_22M
H458_22Md
H458_23M
H458_23Md
H458_24M
H458_24Md
H458_25M
H458_25Md
P458_26M
P458_26Md
H458_27M
P458_27Md
P458_28F
P458_28Fd
H458_29M
P458_29Fd
H458_30F
P458_30Md
P458_31F
P458_31Md
H458_32F
P458_32Fd
P458_33Md
H458_34M
P458_34Fd
H458_35F
P458_35Md
P458_36F
P458_36Fd
P458_37Fd
P458_37M
P458_38Fd
P458_38M
P458_39F
P458_39Md
P458_40F
P458_40Fd
P458_41M
P458_41Md
P458_42Fd
P458_42M
P458_43F
P458_43Fd
P458_44Fd
P458_45F
P458_45Fd
P458_46M
H458_47M
P458_48F
P458_49M
P458_50F
H458_51Fd
P458_51F
H458_52F
H458_52Fd
H458_53Md
P458_53M
H458_54Fd
H458_55Md
P458_55M
H458_56M
H458_56Md
H458_57Fd
P458_57M
H458_58Fd
P458_58F
H458_59M
P458_60F
H458_61F
H458_61Fd
H458_62Fd
H458_62M
P458_64F
H458_65M
P458_65M
H458_66F
H458_67M
H458_68F
H458_69F
H458_70M
H458_71F
P458_72F
H458_73F
H458_74F
H458_75F
H458_76F
H458_77F
H458_78F
H458_79F
H458_81F
H458_82F
H458_84M
H458_86M
P458_87F
P458_88F
P458_90F
H458_91F
P458_92F
P458_93F
P458_94M
H458_95M
P458_96M
P458_97M
P458_98F
P458_99M
P458_100F
P458_101M
H458_102F
P458_105F
H458_107M
H458_108M
P458_109M
H458_110M
P458_111M
H458_112F
P458_113F
H458_114M
P458_115F
P458_116M
P458_117F
H458_118F
H458_119F
H458_120F
P458_121F
H458_122F
P458_123F
H458_127F
P458_129M
H458_130F
H458_131F
H458_132M
H458_133F
P458_134F
H458_135F
H458_137M
H458_138F
H458_139F
H458_141M
H458_142M
H458_143F
H458_144F
H458_145F
H458_146F
H458_147F
H458_148M
P458_149M
H458_151F
P458_152M
P458_153F
P458_155F
P458_156M
P458_157F
P458_158F
P458_159F
P458_161F
P458_162M
P458_163F
H458_164M
P458_165M
P458_166F
H458_167F
H458_168F
H458_171F
H458_172F
P458_173F
P458_175F
P458_176F
P458_177F
P458_178F
H458_180M
P458_181M
P458_183F
P458_184F
P458_185F
P458_186F
P458_187M
P458_188F
H458_189F
H458_190M
P458_191M
P458_192F
H458_193M
P458_194F
P458_195M
P458_196M
H458_197F
H458_198F
H458_199M
H458_200F
P458_201M
H458_202M
P458_203M
P458_204M
P458_205F
H458_206F
P458_207M
H458_208M
P458_210F
H458_211F
P458_212F
H458_214F
P458_215F
P458_216F
P458_217F
H458_218M
P458_219F
P458_220F
P458_221F
H458_224M
H458_225F
H458_226M
P458_227F
H458_228M
H458_229M
P458_230F
H458_232M
P458_233F
H458_234F
P458_235F
H458_236M
H458_238F
H458_240M
P458_244M
H458_245M
H458_250M
H458_251M
P458_253F
H458_254M
H458_256F
H458_257F
H458_258M
H458_260F
H458_261F
P458_262F
P458_263F
H458_264M
H458_265F
P458_266M
P458_267M
P458_268F
H458_269F
P458_270F
H458_271F
P458_272F
H458_274F
H458_275F
H458_276F
P458_277M
H458_279M
H458_280M
P458_281F
H458_282M
H458_283M
H458_284M
H458_285M
H458_286M
H458_287F
H458_288M
H458_289M
H458_290F
H458_291M
H458_292M
H458_293F
H458_294F
H458_295F
H458_296F
H458_297M
P458_298F
P458_299M
P458_300F
P458_301M
P458_302F
H458_304F
P458_305M
H458_306M
H458_307M
P458_308F
P458_309F
H458_310F
H458_311M
H458_312M
H458_313M
H458_314F
P458_315M
H458_316F
H458_317M
P458_318F
H458_319F
H458_320M
P458_321M
H458_322F
H458_324F
H458_325M
H458_327M
H458_328F
P458_329M
H458_330M
H458_331F
P458_332F
H458_333M
H458_334F
H458_335F
H458_336F
H458_338F
H458_339F
H458_340M
H458_341F
H458_342M
H458_343F
H458_344M
H458_345M
H458_346M
P458_347M
P458_348F
H458_349F
H458_350F
P458_351M
H458_352M
139_01F
139_02M
139_03M
139_04F
139_05F
139_07M
139_08M
139_09F
139_11M
139_12M
139_13M
139_14F
139_15F
139_16F
139_17F
139_18M
139_19F
139_20F
139_21M
139_22F
139_23M
139_24M
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