Hi Satra, I have been trying to do that too. Do you have it as Nipy code? Thanks. Shantanu
On Thu, April 11, 2013 10:53 am, Satrajit Ghosh wrote: > hi dan, > > if you use bbregister to match the DTI b0 to freesurfer space, then you > can > transform the surface back (no guarantees on the tesselations though i > think). the only additional component here would be a tkr transform that's > based on the conformed space. i might even have some python code lying > around to do this. i'll take a look. > > cheers, > > satra > > On Thu, Apr 11, 2013 at 10:40 AM, Daniel Haehn < > daniel.ha...@childrens.harvard.edu> wrote: > >> Hi all, >> >> I want to transform the Freesurfer Smoothwm surfaces to DTI B0 space. >> >> I found >> http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferTrackVisTransforms >> but >> this describes transforming the B0 to T1 space and then match the >> surfaces. >> I don't want to change the DTI B0 image. >> >> What is the best way to do that? >> >> Thank you very much! >> Daniel >> >> -- >> Daniel Haehn >> FNNDSC / BCH >> +1.857.218.5140 >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
