I noticed it was taking 6-7 seconds to read in a wfile (scalar surface overlay) into matlab using fast_read_wfile.m. In case anybody else finds this annoying, here's a faster alternative that produces identical output:
in fast_read_wfile.m, replace everything after the first fread line with: vnum = fast_fread3(fid) ; % Number of non-zero values A = uint32(fread(fid,vnum*7,'uchar')); fclose(fid); v = bitshift(A(1:7:end), 16) + bitshift(A(2:7:end),8) + A(3:7:end); w0 = bitshift(A(4:7:end),24) + bitshift(A(5:7:end),16) + bitshift(A(6:7:end),8) + A(7:7:end); w = zeros(max(v),1); w(v+1) = typecast(w0,'single'); -Keith
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.