Now is ok. Thank you very much!! Stefano
----Messaggio originale---- Da: gr...@nmr.mgh.harvard.edu Data: 2-apr-2013 20.09 A: <std...@virgilio.it> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: R: Re: R: Re: perirhinal analysis Try mri_label2label --srcsubjectsubject_prova --srclabel rh.perirhinal.label --trgsubject Con01 --trglabel Con01/label/rh.perirhinal.label --hemi rh --regmethod surface also note that if you run mri_label2label with only the --help argument, it will print out help as to what each flag means as well as examples. Reading the help is a good approach when you cannot get immediate assistant from the list. You'll also learn about how the command is supposed to work. Pretty soon, you'll be the one helping others! doug On 04/02/2013 04:37 AM, std...@virgilio.it wrote: > Dear Doug, > > I'm trying to follow your indication but, please, could you explicate > what's meaning "subjet with" and where I should put it? > Could you show me the correct command line, please? > > The wrong command line is > mri_label2label --srcsubject fsaverage --srclabel rh.perirhinal.label > --trgsubject Con01 --trglabel Con01/label/rh.perirhinal.label --hemi > rh --regmethod surface > > Many thanks, > > > Stefano > > > > > ----Messaggio originale---- > Da: gr...@nmr.mgh.harvard.edu > Data: 28-mar-2013 18.32 > A: <std...@virgilio.it> > Cc: <freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: R: Re: [Freesurfer] perirhinal analysis > > If the source subject is subject_prova then you need to spec that subjet > 2with --srcsubject (instead of fsaverage) > doug > > > On 03/28/2013 01:11 PM, std...@virgilio.it wrote: > > Yes, it is located in > > /Applications/freesurfer/subjects/subject_prova/Con01/label/rh.perirhinal.label. > > > > > > > > Stefano > > > > > > > > > > ----Messaggio originale---- > > Da: gr...@nmr.mgh.harvard.edu > > Data: 28-mar-2013 17.46 > > A: <freesurfer@nmr.mgh.harvard.edu> > > Ogg: Re: [Freesurfer] perirhinal analysis > > > > It says "no such file or directory" > > does rh.perifhyinal.label exist? > > > > > > On 03/28/2013 11:55 AM, std...@virgilio.it wrote: > > > Hi list, > > > > > > I'm running perirhinal analysis with this error: > > > > > > mri_label2label --srcsubject fsaverage --srclabel rh.perirhinal.label > > > --trgsubject Con01 --trglabel Con01/label/rh.perirhinal.label --hemi > > > rh --regmethod surface > > > > > > srclabel = rh.perirhinal.label > > > srcsubject = fsaverage > > > trgsubject = Con01 > > > trglabel = Con01/label/rh.perirhinal.label > > > regmethod = surface > > > > > > srchemi = rh > > > trghemi = rh > > > trgsurface = white > > > srcsurfreg = sphere.reg > > > trgsurfreg = sphere.reg > > > usehash = 1 > > > Use ProjAbs = 0, 0 > > > Use ProjFrac = 0, 0 > > > DoPaint 0 > > > > > > SUBJECTS_DIR/Applications/freesurfer/subjects/subject_prova > > > FREESURFER_HOME /Applications/freesurfer > > > Loading source label. > > > No such file or directory > > > mri_label2label: could not open label file rh.perirhinal.label > > > No such file or directory > > > ERROR reading rh.perirhinal.label > > > > > > My $SUBJECTS_DIR=/Applications/freesurfer/subjects/subject_prova and > > > rh.perirhinal.label exist and it is located > > > in /Applications/freesurfer/subjects/subject_prova/Con01/label > > > > > > > > > Thanks, > > > > > > > > > Stefano > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > > in error > > but does not contain patient information, please contact the sender > > and properly > > dispose of the e-mail. > > > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
