Actually, #2 will not work. I don't think you can use qdec with the xhemi stuff anyway. You should use the mris_preproc command followed by mri_glmfit. doug
On 03/28/2013 12:51 PM, Douglas N Greve wrote: > On 03/28/2013 12:16 PM, Ejoe Yizhou Ma wrote: >> Dear Freesurfer experts, >> >> I'm trying to investigate lh-to-rh asymmetry, so I register my >> subjects to the subject of fsaverage_sym following the instructions on >> this page: http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi. After all >> the surfreg commands I've got ?h.thickness files in subjid/xhemi/surf. >> >> In my lab we generally process ?h.thickness files with the next two >> commands before statistically analysis: >> >> "mris_thickness -max 10 subjid ?h thickness_max10" >> "recon-all -qcache -measure thickness_max10 -target fsaverage_510 >> -fwhm 10 -no-isrunning -s subjid -hemi ?h" >> >> To keep with this protocol, my questions are >> 1) how do I use "mris_thickness" properly so that I don't overwrite >> the files registered to fsaverage_510? > I think it will recreate the basic ?h.thickness file and will not touch > registrations. >> 2) in "recon-all -qcache", will it do the trick by substituting >> "fsaverage_sym" for "fsaverage_510"? >> > Yes, that should work. >> Thank you in advance, >> Cherry >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
