Hi, I was wondering if the -clean-* flags should only be used when you've performed manual edits on your volumes, or if they are also necessary when you re-process your subjects?
For instance, let's say I edit the Talairach transform and run the entire recon-all process (using the -all flag) on a subject I had previously processed using the previous release of Freesurfer. If I had done no other manual edits on volumes such as brainmask.mgz, wm.mgz, etc., will these volumes be automatically overwritten when I run the latest version of recon-all, or do I need to specify the corresponding -clean-* flags in order for this to take place? Thanks, Gabriel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
