Hi Doug, Thanks for the reply. From the command line the command 3dvolreg.afni returned the following error:
3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol: afni_ncerr -Yuhong On Thu, Mar 21, 2013 at 12:08 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > wrote: > > Hi Yuhong, > What happens when you run 3dvolreg.afni from the command line without > any args? > doug > > On 03/21/2013 12:38 PM, Y.V. Jiang wrote: > > Hi Doug, > > > > I was running preproc-sess in the newly released freesurfer-5.2.0. The > > command I used was: > > > > preproc-sess -sf sessid -df sessdir -fsd bold -surface fsaverage lhr > > -mni305 -fwhm 6 -per-run > > > > The program failed with the following errors: > > > > 3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat -1Dmatrix_save > > 004/fmcpr.mat -base 004/tmp.mc-afni2.29239/tempvol.nii.gz -prefix > > 004/tmp.mc-afni2.29239/outvol.nii.gz 004/tmp.mc-afni2.29239/invol.nii.gz > > 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol: > > afni_ncerr > > ERROR: 3dvolreg.afni > > Invalid null command. > > > > I have the file 3dvolreg.afni in $FREESURFER_HOME/bin. There is > > another file of the same name under afni/bin. Preproc-sess is relying > > on the version in $FREESURFER_HOME/bin. > > > > Do you know what the problem is? Should I replace freesurfer's copy of > > 3dvolreg.afni with AFNI's copy of 3dvolreg.afni? > > > > Thanks. > > > > -Yuhong > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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