Hi Yuhong, What happens when you run 3dvolreg.afni from the command line without any args? doug
On 03/21/2013 12:38 PM, Y.V. Jiang wrote: > Hi Doug, > > I was running preproc-sess in the newly released freesurfer-5.2.0. The > command I used was: > > preproc-sess -sf sessid -df sessdir -fsd bold -surface fsaverage lhr > -mni305 -fwhm 6 -per-run > > The program failed with the following errors: > > 3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat -1Dmatrix_save > 004/fmcpr.mat -base 004/tmp.mc-afni2.29239/tempvol.nii.gz -prefix > 004/tmp.mc-afni2.29239/outvol.nii.gz 004/tmp.mc-afni2.29239/invol.nii.gz > 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol: > afni_ncerr > ERROR: 3dvolreg.afni > Invalid null command. > > I have the file 3dvolreg.afni in $FREESURFER_HOME/bin. There is > another file of the same name under afni/bin. Preproc-sess is relying > on the version in $FREESURFER_HOME/bin. > > Do you know what the problem is? Should I replace freesurfer's copy of > 3dvolreg.afni with AFNI's copy of 3dvolreg.afni? > > Thanks. > > -Yuhong > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
