I'm sorry. I forgot to tell you the version of my freesurfer. The version is v5.2.0.
Thanks, Hiroki. (2013/03/17 13:51), Hiroki Kurashige wrote: > Dear freesurferers, > > I have two questions about the recon-all with -autorecon2 option. > > First one is about ASeg Stats (mri_segstats). > In the following status log, I found that ASeg Stats step was executed > as a final step of -autorecon2: > > status file for recon-all > Sat Mar 16 21:50:42 JST 2013 > #@# EM Registration Sat Mar 16 21:50:42 JST 2013 > #@# CA Normalize Sat Mar 16 22:13:19 JST 2013 > #@# CA Reg Sat Mar 16 22:15:14 JST 2013 > #@# CA Reg Inv Sun Mar 17 01:57:37 JST 2013 > #@# Remove Neck Sun Mar 17 01:58:47 JST 2013 > #@# SkullLTA Sun Mar 17 02:00:06 JST 2013 > #@# SubCort Seg Sun Mar 17 02:23:38 JST 2013 > #@# Merge ASeg Sun Mar 17 02:50:50 JST 2013 > #@# Intensity Normalization2 Sun Mar 17 02:50:50 JST 2013 > #@# Mask BFS Sun Mar 17 02:54:56 JST 2013 > #@# WM Segmentation Sun Mar 17 02:54:58 JST 2013 > #@# Fill Sun Mar 17 02:57:59 JST 2013 > #@# Tessellate lh Sun Mar 17 02:58:54 JST 2013 > #@# Smooth1 lh Sun Mar 17 02:59:01 JST 2013 > #@# Inflation1 lh Sun Mar 17 02:59:04 JST 2013 > #@# QSphere lh Sun Mar 17 02:59:28 JST 2013 > #@# Fix Topology lh Sun Mar 17 03:02:37 JST 2013 > #@# Make White Surf lh Sun Mar 17 03:23:10 JST 2013 > #@# Smooth2 lh Sun Mar 17 03:33:13 JST 2013 > #@# Inflation2 lh Sun Mar 17 03:33:17 JST 2013 > #@# Curvature Stats lh Sun Mar 17 03:35:12 JST 2013 > #@# Tessellate rh Sun Mar 17 03:35:17 JST 2013 > #@# Smooth1 rh Sun Mar 17 03:35:23 JST 2013 > #@# Inflation1 rh Sun Mar 17 03:35:26 JST 2013 > #@# QSphere rh Sun Mar 17 03:35:50 JST 2013 > #@# Fix Topology rh Sun Mar 17 03:39:04 JST 2013 > #@# Make White Surf rh Sun Mar 17 03:56:40 JST 2013 > #@# Smooth2 rh Sun Mar 17 04:06:43 JST 2013 > #@# Inflation2 rh Sun Mar 17 04:06:46 JST 2013 > #@# Curvature Stats rh Sun Mar 17 04:08:41 JST 2013 > #@# ASeg Stats Sun Mar 17 04:08:46 JST 2013 > recon-all -s bert finished without error at Sun Mar 17 04:11:54 JST 2013 > > According to the help document for recon-all, ASeg Stats should run in > the -autorecon3 step, not in -autorecon2. > Is this some kind of bug? > http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllTableStableV5.1?action=print > > Second questions is about Cortical Ribbon Mask. > At the Manual-Intervention Workflow Directives in recon-all help, > Cortical Ribbon Mask is classified into the part of -autorecon3. > However, the Step Description Summaries says that the -autorecon2 stage > ends at the Cortical Ribbon Mask. > Which one is right? > http://surfer.nmr.mgh.harvard.edu/fswiki/recon-all > > > Thanks, > Hiroki > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
