can you run ls -l and mri_info on it?
On Fri, 15 Mar 2013, Valtina Pouegue
wrote:
I get this error-------------
esther@m3012-04 ~]$ mri_info
$SUBJECTS_DIR/AA/t1_icbm_normal_1mm_pn3_rf20.mnc
mincRead(): can't find
file/home/esther/Freesufer/freesurfer/subjects/AA/t1_icbm_normal_1mm_pn3_rf20.m
nc
-------I check in the directory enad the file is right there,
> Date: Fri, 15 Mar 2013 09:24:22 -0400
> From: fis...@nmr.mgh.harvard.edu
> To: pval...@hotmail.com
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] mri_convert problem
>
> Hi Valtina
>
> you can convert directly without going through nii. What happens when you
> run ls -l on that file? Or mri_info?
>
> cheers
> Bruce
>
> On Fri, 15 Mar 2013, Valtina Pouegue wrote:
>
> > Hi,
> >
> > I have a problem of conversion. I would like to convert mnc file to mgz.
But I think I shoul first convert mnc to nii then
> > nii to mgz. ,
> > so I try the command mri_convert and I have this error;
> > -------------
> > [esther@m3012-04 ~]$ mri_convert $SUBJECTS_DIR/Patient1/fichierMnc.mnc
Folder1.nii.gz
> > mri_convert
/home/esther/Freesufer/freesurfer/subjects/Patient1/fichierMnc.mnc
Folder1.nii.gz
> > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
> > reading from
/home/esther/Freesufer/freesurfer/subjects/Patient1/fichierMnc.mnc...
> > mincRead(): can't find file
/home/esther/Freesufer/freesurfer/subjects/Patient1/fichierMnc.mnc
> > [esther@m3012-04 ~]$
> > --------------------
> > I look up, and the file is at the rith place.... Could you help me..
> > Thanks
> >
> > VP]
> >
> >
>
>
> The information in this e-mail is intended only for the person to whom it
is
> addressed. If you believe this e-mail was sent to you in error and the
e-mail
> contains patient information, please contact the Partners Compliance
HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
error
> but does not contain patient information, please contact the sender and
properly
> dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
