Hi again, Any suggestion? I haven't any idea about this error. Why does it happen?
Thank you. alexandra.cristo...@urjc.es escribió: > Hi Bruce, > > This is the information about my version: > > freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 > > As you can see, it runs in a iMac version 10.6.8 > > Thanks! > > "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> escribió: > >> what version are you running? This should never happen on the first >> subject, so it's pretty puzzling. >> Bruce >> On Fri, 8 Mar 2013, >> alexandra.cristo...@urjc.es wrote: >> >>> Hi everybody, >>> >>> I'm trying to create my own atlas with the rebuild_gca_atlas script. I >>> obtain the "Input TR, TE, FlipAngle for each subjects must match" >>> error in the # TRAIN FROM SEGMENTED_SUBJECTS USING M3D_ONE step (using >>> mri_ca_train for all subjects). >>> TR, TE and FlipAngle are the same for all patients. >>> >>> What can be the problem? >>> >>> >>> The log is: >>> >>> mri_ca_train -prior_spacing 2 -node_spacing 4 -mask brain.mgz >>> -parc_dir seg_edited.mgz -xform talairach_one.m3z -T1 norm.mgz -check >>> 4163 4168 >>> /Applications/freesurfer/subjects/average/RB_all_2013-03-07.gca >>> reading input 0: /Applications/freesurfer/subjects/4163/mri/norm.mgz >>> spacing priors every 2.0 mm >>> spacing nodes every 4.0 mm >>> using MR volume brain.mgz to mask input volume... >>> reading segmentation from subject's mri/seg_edited.mgz directory >>> reading xform from talairach_one.m3z >>> reading T1 data from subject's mri/norm.mgz directory >>> will conduct sanity-check of labels... >>> training on 2 subject and writing results to >>> /Applications/freesurfer/subjects/average/RB_all_2013-03-07.gca >>> gcaAllocMax: node dims 64 64 64 >>> gcaAllocMax: prior dims 128 128 128 >>> gcaAllocMax: max_labels 4 >>> *************************************************************************** >>> processing subject 4163, 1 of 2... >>> reading volume /Applications/freesurfer/subjects/4163/mri/brain.mgz >>> for masking... >>> gunzip -c >>> /Applications/freesurfer/subjects/4163/mri/transforms/talairach_one.m3z >>> checking labels in subject 4163... >>> max_xtal_l_hippo = -12.6 >>> max_xtal_l_caudate = -5.8 >>> max_xtal_l_amygdala = -17.1 >>> max_xtal_l_putamen = -12.7 >>> max_xtal_l_pallidum = -11.4 >>> min_xtal_r_hippo = 15.2 >>> min_xtal_r_caudate = 6.4 >>> min_xtal_r_amygdala = 16.4 >>> min_xtal_r_putamen = 13.9 >>> min_xtal_r_pallidum = 13.1 >>> Input TR, TE, FlipAngle for each subjects must match. >>> >>> 23 prior holes filled >>> *************************************************************************** >>> processing subject 4168, 2 of 2... >>> nn >>> >>> >>> Thank you in advance. >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
