what was your command line?
On Thu, 7 Mar 2013, Xiaowei Song wrote:
Sorry, I did not make it clear.
In make_average_volume.log, the error message is:
1/139 1173622 aseg Sat Feb 23 02:26:02 EST 2013
mri_vol2vol --mov /data/lis9/fs/x/1173622/mri/aseg.mgz --targ
/usr/local/freesurfer/average/mni305.cor.mgz --xfm
/data/lis9/fs/x/1173622/mri/transforms/talairach.m3z --o
/data/lis9/fs/x/avgGrp139/tmp/make_average_vol-tmp-55832/seg-1173622.mgh
--interp nearest
ERROR: /data/lis9/fs/x/1173622/mri/transforms/talairach.m3z does not start
as 'MNI Transform File'/spin1/users/lis9/fs/dcm.mprage.mgz
ERROR: mri_vol2vol failed.
On Thu, Mar 7, 2013 at 5:49 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
sorry, I don't understand. What was the error? I don't see one
in this email. Can you send us the actual screen output?
cheers
Bruce
On Thu, 7 Mar 2013, Xiaowei Song wrote:
This error may come from regio_read_mincxfm function
in registerio.c.Does
this mean something wrong in recon-all?
I forgot to mention that FreeSurfer version is
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
On Thu, Mar 7, 2013 at 5:34 PM, Xiaowei Song
<dawnwei.s...@gmail.com> wrote:
Hi all,
Did you encounter the error message talairach.m3z
does not start as
'MNI Transform File' when making average of
subjects?
I checked all the recon-all.log file and did not
find error, but when
running make_average_subject after recon-all, then
this error shoot.
To repeat the error message, I tried the following
command which is
called by make_average_subject and found all my
subjects shoot this
error.
mri_vol2vol --mov 1173622/mri/aseg.mgz --targ
/usr/local/freesurfer/average/mni305.cor.mgz --xfm
1173622/mri/transforms/talairach.m3z --o
/tmp/make_average_vol-tmp-164320_seg-1173622.mgh
--interp nearest
I found another same question asked before, butnoanswer.
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/0
24
064.html
Any hint or help will be appreciated. Thank you.
--
Xiaowei Song
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Xiaowei Song
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