Hi Sean - This works on our redhat centos 4 and centos 6. I can dig around
some more, but it'll have to wait for Monday b/c I'll be out of the office
the next couple of days.
As for your other question, the symlink part has been moved to the -prep
step, specifically to make it easier to then run bedpostx outside of
trac-all if needed.
a.y
On Wed, 6 Mar 2013, Sean Hatton wrote:
> Hi Anastasia,
>
> FSLVersion is there and does create the variable. I believe it is a syntax
> error, is the bracket suppose to be there? I have also noticed in the bedp
> section of trac-all that the "Create links named as expected by bedposts"
> section is removed - is this correct? Is it called elsewhere? I am running
> CentrOS 4 (64bit) on Ubuntu 12.04.
>
> Cheers,
>
> Sean
>
>
>
>
>
> On 7/03/13 3:29 AM, "Anastasia Yendiki" <ayend...@nmr.mgh.harvard.edu>
> wrote:
>
>>
>> Hi Sean - Thanks for trying out the new version!
>>
>> From what I've seen, the file $FSLDIR/etc/fslversion exists in FSL 5 as
>> well. Does it exist in your distribution?
>>
>> a.y
>>
>> On Wed, 6 Mar 2013, Sean Hatton wrote:
>>
>>> Hi all,
>>>
>>> I have installed FreeSurfer 5.2 to take advantage of improvements in
>>> TRACULA. When I run trac-all -bedp I get an error:
>>>
>>> .../freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected
>>>
>>> Looking at the programming it is faulting on line 131 where it is
>>> checking the FSL version.
>>>
>>> fslver=(`cat $FSLDIR/etc/fslversion | sed 's/\./ /g'`)
>>>
>>> Is this syntax correct? Is TRACULA compatible with FSL 5+?
>>>
>>>
>>> Sean Hatton
>>> Brain and Mind Research Institute
>>> University of Sydney
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>>>
>>
>>
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