DJ,
Agreed that the distribution has gotten bloated. In future releases I'd
like to change it to not include most of the data and to have recon-all
or other utilities print a 'wget' command to use to download the data
when needed.
I've updated the ReleaseNotes section with a list of some directories of
stuff that is not used in the default stream. So deletion depends on
whether you or your local user-base will ever need these, which can be
tough to predict:
* freesurfer/average/mult-comp-cor - Correction for Multiple
Comparisons pre-calc - 1.3G
* freesurfer/subjects/fsaverage? - fsaverage at other iso-levels -
310M
* freesurfer/subjects/fsaverage_sym - symmetric fsaverage for
contra-lateral surface mapping - 197M
* freesurfer/subjects/cvs_avg* - CVS Combined Volume and Surface
registration target - 531M
* freesurfer/trctrain - Tracula training set - 886M
These files in total are about 3GB.
https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
Nick
On Tue, 2013-03-05 at 13:43 -0600, Dian Jiao wrote:
> Hi,
>
>
> I was trying to install Freesurfer on a HPC cluster. It seems to be a
> pretty large distribution, ~4.3 GB after unpacking. I wonder if all
> the subfolders are needed for running freesurfer or is there any
> folders could be skipped. Thanks in advance.
>
>
> DJ
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