Hi Stefano, Just specify a directory on your --out /path/to/directory, to which you have write permission- it seems that you can read from the directory /freesurfer/subjects but not write files to it. the other alternative is to ask your IT services to give you write permission for that directory. specifying another loaction as doug suggests will also solve the problem. Hth, shantanu
On Sat, March 2, 2013 11:30 am, std...@virgilio.it wrote: > I apologize for my question but I have MD background. Can you explain me > more basically about permision? > > Thanks for your kindness and patience > > > Stefano > > > ---Messaggio originale--- > Da: gr...@nmr.mgh.harvard.edu > Data: 2-mar-2013 17.08 > A: <freesurfer@nmr.mgh.harvard.edu> > Oggetto: Re: [Freesurfer] mris_preproc question > > Stefano, you don't have write permission into > /Applications/freesurfer/subjects. > Give yourself write permissions or use another folder. Another folder is > probably better. > doug > > > On 3/2/13 5:10 AM, std...@virgilio.it wrote: >> Hi list, >> >> I'm trying to run mris_preproc. >> >> I have my recon-all output in >> /Application/freesurfer/subjects/subject_prova/folder_for_each_subj >> >> The file.fsgd is in /Application/freesurfer/subjects directory and it >> is called as prova.fsgd. >> >> When I run: >> >> mris_preproc --fsgd /Applications/freesurfer/subjects/prova.fsgd >> --target fsaverage --hemi lh \ --meas thickness --out >> /Applications/freesurfer/subjects/lh.thickness.00.mgh >> >> I obtain: >> >> nsubjects = 37 >> tmpdir is /Applications/freesurfer/subjects/tmp.mris_preproc.3476 >> /Applications/freesurfer/subjects >> mkdir: /Applications/freesurfer/subjects/tmp.mris_preproc.3476: >> Permission denied >> ERROR: creating /Applications/freesurfer/subjects/tmp.mris_preproc.3476 >> >> To check it, I also attacked the .fsgd file. >> >> >> Thank you very much, >> >> >> Stefano >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
