Usually what I do is create a sym link called "current" that I point to
the newest version of Freesurfer. e.g.
cd /usr/local/freesurfer
ln -s $PWD/freesurfer-5.1.0 current
So then in my .bashrc file I set
FREESURFER_HOME='/usr/local/freesurfer/current'
Obviously you can change this if you wanted to use an older version.
Chris
On 02/21/2013 08:43 PM, Joshua Lee wrote:
Thanks.
Best,
-
Josh
On Thu, Feb 21, 2013 at 10:05 AM, Shantanu Ghosh
<shant...@nmr.mgh.harvard.edu <mailto:shant...@nmr.mgh.harvard.edu>>
wrote:
Or you may have multiple freesurfer versions within the freesurfer
director, something like
/freesurfer/5.0, /freesurfer/5.1, /freesurfer/5.2b,
/freesurfer/5.2 etc.
and then
export
FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer/5.1 etc
Hth, S.
On Thu, February 21, 2013 12:59 pm, Shantanu Ghosh wrote:
> Hi Josh,
> you can modify the SetUpFreeSurfer.sh to source the correct version.
> Hth, Shantanu
>
> On Thu, February 21, 2013 12:55 pm, Joshua Lee wrote:
>> If I want to install the new Freesurfer version but retain the
older
>> Freesurfer install as well, what issues might I face?
>> Is it simply sourcing the usual setup scripts?
>>
>> export
FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer
>> source $FREESURFER_HOME/SetUpFreeSurfer.sh
>>
>> -
>> Josh
>> _______________________________________________
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>
>
> --
> Shantanu Ghosh, Ph.D.
> Harvard Medical School & Massachusetts General Hospital
> Martinos Center for Biomedical Imaging
>
> _______________________________________________
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<mailto:Freesurfer@nmr.mgh.harvard.edu>
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>
>
>
--
Shantanu Ghosh, Ph.D.
Harvard Medical School & Massachusetts General Hospital
Martinos Center for Biomedical Imaging
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_______________________________________________
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
