Knut, I noticed in the log that there was only 284KB of free memory available, which is not enough to run freesurfer, although it would seem like it should be enough to run the mri_convert command. Can you free-up more memory and re-run? Also, I noticed that you're running the Centos6 build, what OS are you running? Fedora 18? Does the v5.2 Centos4 freesurfer build work on that?
Nick On Tue, 2013-01-29 at 19:30 +0100, Knut J Bjuland wrote: > When I run recon-all using freesurfer 5.2 latest beta it will segment > crash. > > Linux mypc 3.7.4-204.fc18.x86_64 #1 SMP Wed Jan 23 16:44:29 UTC 2013 > x86_64 x86_64 x86_64 GNU/Linux > /home/knutjbj/freesurfer/ernie > > mri_convert /usr/local/freesurfer/subjects/sample-001.mgz > /home/knutjbj/freesurfer/ernie/mri/orig/001.mgz > > mri_convert /usr/local/freesurfer/subjects/sample-001.mgz > /home/knutjbj/freesurfer/ernie/mri/orig/001.mgz > Segmentation fault > Linux super-knut 3.7.4-204.fc18.x86_64 #1 SMP Wed Jan 23 16:44:29 UTC > 2013 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s ernie exited with ERRORS at ti. 29. jan. 19:25:15 +0100 2013 > > For more details, see the log file > /home/knutjbj/freesurfer/ernie/scripts/recon-all.log > To report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > Knut J > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
