actually, looking at your cmd line more I see that you have slashes (/) in the subject names. The argument to --subjects should just be a list of name. See the help (aparcstats2table -h) for examples. doug
On 01/18/2013 04:58 PM, Nucleos P wrote: > Hello experts: > > Can someone please help me understand what I am doing wrong? This is > the first time I am trying this command and it will not work... > > COMMAND: aparcstats2table --subjects /RGS4_31p/rgs0868_raw > /RGS4_31p/rgs0871_raw /RGS4_31p/rgs0883_raw/ /RGS4_31p/rgs1194_raw144/ > /RGS4_31p/rgs1311a/ /RGS4_31p/rgs1370a/ /RGS4_31p/rgs1383a/ -t > RGS4_31p/aparc.volume.rh -m volume --hemi=rh > > PATH: [/usr/local/freesurfer/subjects/RGS4_31p/rgs0868_raw/stats]:pwd > /usr/local/freesurfer/subjects/RGS4_31p/rgs0868_raw/stats > > ERROR: SUBJECTS_DIR : /usr/local/freesurfer/subjects > Parsing the .stats files > ERROR: The stats file /RGS4_31p/rgs0868_raw/stats/rh.aparc.stats is > not found or is too small to be a valid statsfile > Use --skip flag to automatically skip bad stats files > > > Thank you, > Catherine > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
