Hi Paul,
also, is this happening in the -base run or in one of the -long runs (or
in all of the -long runs of that subject). What binary is running so
slowly (you mentioned some output "labelling slice", can you scroll up
in the log and see what exactly is running)?
Best, Martin
On 01/18/2013 02:46 PM, Bruce Fischl wrote:
how much RAM do you have in the machine? And are there other processes
running at the same time? How many timepoints does the subject have?
Bruce
On Fri, 18 Jan 2013, paul horton wrote:
Hi Alex,
Thanks for your reply.
I am also using Linux. I have restarted the analysis a few times but the
process for this particular subject is very slow. When I try the same
analysis on a different subject using the same machine, it only takes
a few
hours. So not sure why the analysis is having problems with this
particular
subject.
Best wishes
Paul
On 18 Jan 2013, at 16:40, "Alex Hanganu" <al.hang...@yahoo.ca> wrote:
Hi Paul,
I also had such problems previously. My initial analyses were
performed on mac. Though it might seem strange, some analyses
resolved after I just restarted the computer. Other ones I
analysed on centos. Now I am doing all the recons on linux.
best wishes,
Alex.
Le 1/18 9:22, paul horton a écrit :
> Date: Fri, 18 Jan 2013 08:54:48 -0500
> From: fis...@nmr.mgh.harvard.edu
> To: horton_p...@hotmail.com
> Subject: RE: [Freesurfer] longitudinal analysis
>
> Hi Paul
>
> can you cc the list so that others can answer?
>
> thanks
> Bruce
> On Fri, 18 Jan 2013, paul
> horton wrote:
>
> > Hi Brian,
> >
> > Thanks for your reply.
> >
> > I am running freesurfer 4.5.0. We are using the older
version so that the
> > analyses performed are the same across subjects.
> >
> > Best wishes
> >
> > Paul
> >
> > Date: Fri, 18 Jan 2013 08:21:05 -0500
> > From: fis...@nmr.mgh.harvard.edu
> > To: horton_p...@hotmail.com
> > CC: freesurfer@nmr.mgh.harvard.edu
> > Subject: Re: [Freesurfer] longitudinal analysis
> >
> > Hi Paul
> >
> > what is the actual binary being run?
> >
> > Bruce
> > On Fri, 18 Jan 2013, paul horton wrote:
> >
> > > Hi guys,
> > >
> > > I am currently running a longitudinal analysis on a
set of scan. It is
> > > currently running and so far it has taken 5 days. It
seems to be taking a
> > > large amount of time on a process called labelling
slice. I have run the
> > > same analysis on other subjects which took about 6
hours to complete. So
> > I
> > > was wondering if you know of any reason why a set of
scans would take long
> > er
> > > to process than others. I have checked the inital
scans and nothing seems
> > > obviously wrong with them.
> > >
> > > Best Wishes
> > >
> > > Paul
> > >
> > >
> >
> > _______________________________________________
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