I can see that the command line is not set up to create the mean cortical thickness, but I don't know why the arguments for the command are not being set up properly. Did you run mris_anatomical_stats yourself or did you just run recon-all again? If you ran recon-all, can you send me your recon-all script?
doug On 01/07/2013 01:25 PM, Deirdre O Shea wrote: > Thanks Doug, > > I have attached two files. You will see in 'aparc.stats' that there is > no mean for cortical thickness and in the aparc.stats2 file there is. > > thanks > Deirdre > > On Mon, Jan 7, 2013 at 12:48 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > Can you send the aparc.stats file in question? > doug > On 01/07/2013 11:44 AM, Deirdre O Shea wrote: > > Dear FreeSurfers, > > > > My query relates to the aparc stats file in FreeSurfer. Upon the > > editing and reconstruction of my subjects I have noticed that > the Mean > > Thickness for the cortex was missing, i.e., no value was provided > > despite it being there before I ran another reconstruction. > While this > > has only occurred in a couple of my subjects (out of many) I'm > > wondering what may be the cause and how I may I now go about getting > > this value? > > > > > > Best, > > Deirdre > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
