Hi Priyank, can you send the full terminal output and/or the log file
created?
thanks
doug
On 01/03/2013 03:11 PM, Shukla,Priyank wrote:
> Hi,
> My bbregistration finished with the warnning"
> ---------------------------------------------------------------------------------------------
> WARNING: initial G-W contrast was negative, but expected positive.
> If the mov data has a T1 contrast, re-run with --T1
> --------------------------------------------------------------------------------------------
>
> and does not create subj_RS_register.dat file... I thought, it is
> only warning so it should create the files. Here is the command, I run
> to do bbregistration, where ${sub} is substituted by subject number:
> --------------------------------------
> bbregister --s ${sub}_FS --mov $main_path/$sub/${sub}.RS.mgz --reg
> ${sub}_RS_register.dat --init-fsl --bold --frame $framenum --nearest
> --o ${sub}.RS.template.mgz
> -------------------------------------------------------------------------
>
> Thanks
> Priyank
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
