Hi Jenny 1) yes, they are usually fine, but you *always* should look at the regions you are hoping to make biological statements about.
2) mri_convert -rl rawavg.mgz -rt nearest aseg.mgz aseg.rawavg.nii Wold convert the aseg. Not that they are already in the original RAS space, just a different voxel space Cheers Bruce On Dec 20, 2012, at 6:48 AM, Jenny Mercolini <jennymercol...@gmail.com> wrote: > Hi Freesurfers, > > I am new to this software and i am trying to learn how to use it. > > I have two questions: > > 1) if I do recon-all on a group of 20 subject, and I am primarily interested > in a few regions (In my case - amygdala, insula and anterior cingulate > cortex), do I have to edit all the datasets in tkmedit to make sure that > these ROIs are "where they ar supposed to be"? > > 2) What is the easiest way to convert recon'ed data from FreeSurfer space to > original subject space ( and mgz files to nifti files)? > > Thank you so much for your help! > > Kind regards, Jenny > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
